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-coded custom tool  (MathWorks Inc)


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    MathWorks Inc -coded custom tool
    Coded Custom Tool, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/-coded+custom+tool/pmc09961017-265-5-4
    Average 90 stars, based on 1 article reviews
    -coded custom tool - by Bioz Stars, 2026-09
    90/100 stars

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    Article Title: Automated magnetic resonance imaging ‐based grading of the lumbar intervertebral disc and facet joints
    Article Snippet: A custom tool written in MATLAB was used to crop the selected T2/T1‐weighted images and define a region of interest enclosing the disc or one of the facet joints from each level in the center of the image and approximately 30% of their surroundings (Figure ).

    Article Title: Towards design process validation integrating graph theory into BIM
    Article Snippet: The aim of this paper is to show the results of research that investigates the limitations and potential for using Building Information Modelling (BIM) as a tool for the assessment of alternative design solutions during the architectural concept design phase.. BIM can be used to analyse the circulation aspects within a building, comparing several design solutions and highlighting the optimal one, considering several parameters.. The layout of a building can be parameterized, abstractly rendered in a conceptual graph and then mathematically analysed.

    Article Title: 3D late gadolinium enhanced cardiovascular MR with CENTRA-PLUS profile/view ordering: Feasibility of right ventricular myocardial damage assessment using a swine animal model
    Article Snippet: A custom tool built in Matlab (The Mathworks Inc. Natick, MA) was used for additional visualization of the RV patch geometry ( 17 ).

    Article Title: Definition of Fiducial Points in the Normal Seismocardiogram
    Article Snippet: A custom tool was developed in MATLAB for this purpose.

    Article Title: ReLayer: a Free, Online Tool for Extracting Retinal Thickness From Cross-Platform OCT Images
    Article Snippet: The manual segmentation was aided by a custom tool created for the purpose with Matlab.

    Article Title: LVNet: Lightweight Model for Left Ventricle Segmentation for Short Axis Views in Echocardiographic Imaging
    Article Snippet: Annotation was performed using a custom tool developed in MATLAB (The Mathworks Inc., Natick, MA, USA) for a previous study [65].

    Article Title: Generative Adversarial Domain Adaptation for Nucleus Quantification in Images of Tissue Immunohistochemically Stained for Ki-67
    Article Snippet: The cropped images were annotated by an expert pancreatic pathologist using a custom tool developed in MATLAB (MathWorks, Natick, MA).

    Article Title: An Efficient CNN-Based Method for Intracranial Hemorrhage Segmentation from Computerized Tomography Imaging.
    Article Snippet: Subsequently, the radiologist’s annotations were meticulously localized using a custom tool in MATLAB.



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    We developed two approaches (AD-ADOLC and AD-Recorder) to make an OpenSim function F and its forward ( F fwd ) and reverse ( F rev ) directional derivatives available within the CasADi environment for use by the NLP solver during the optimization. In the AD-ADOLC approach (top), ADOL-C’s algorithms are used in a C++ code to provide F fwd and F rev . In the AD-Recorder approach (bottom), Recorder provides the expression graph of F as MATLAB source code from which CasADi’s C-code generator generates C-code containing F , F fwd , and F rev . The AD-Recorder approach combines operator overloading, when generating the expression graph, and source code transformation, when processing the expression graph to generate C-code for F , F fwd , and F rev . In both approaches, the code comprising F , F fwd , and F rev is compiled as a Dynamic-link Library (DLL), which is imported as an external function within the CasADi environment. In our application, F represents the multi-body dynamics and is called when formulating the optimal control problem. The latter is then composed into a differentiable optimal control transcription using CasADi. During the optimization, CasADi provides the NLP solver with evaluations of the NLP objective function ( nlp f ), constraints ( nlp g ), objective function gradient ( nlp grad f ), constraint Jacobian ( nlp jac g ), and Hessian of the Lagrangian ( nlp hess l ). CasADi efficiently queries F fwd and F rev to construct the full derivative matrices.

    Journal: PLoS ONE

    Article Title: Algorithmic differentiation improves the computational efficiency of OpenSim-based trajectory optimization of human movement

    doi: 10.1371/journal.pone.0217730

    Figure Lengend Snippet: We developed two approaches (AD-ADOLC and AD-Recorder) to make an OpenSim function F and its forward ( F fwd ) and reverse ( F rev ) directional derivatives available within the CasADi environment for use by the NLP solver during the optimization. In the AD-ADOLC approach (top), ADOL-C’s algorithms are used in a C++ code to provide F fwd and F rev . In the AD-Recorder approach (bottom), Recorder provides the expression graph of F as MATLAB source code from which CasADi’s C-code generator generates C-code containing F , F fwd , and F rev . The AD-Recorder approach combines operator overloading, when generating the expression graph, and source code transformation, when processing the expression graph to generate C-code for F , F fwd , and F rev . In both approaches, the code comprising F , F fwd , and F rev is compiled as a Dynamic-link Library (DLL), which is imported as an external function within the CasADi environment. In our application, F represents the multi-body dynamics and is called when formulating the optimal control problem. The latter is then composed into a differentiable optimal control transcription using CasADi. During the optimization, CasADi provides the NLP solver with evaluations of the NLP objective function ( nlp f ), constraints ( nlp g ), objective function gradient ( nlp grad f ), constraint Jacobian ( nlp jac g ), and Hessian of the Lagrangian ( nlp hess l ). CasADi efficiently queries F fwd and F rev to construct the full derivative matrices.

    Article Snippet: First, we enabled the use of AD in OpenSim through a custom source code transformation tool and through the operator overloading tool ADOL-C. Second, we developed an interface between OpenSim and CasADi to solve trajectory optimization problems.

    Techniques: Expressing, Transformation Assay, Control, Construct